odgi view

projection of graphs into other formats


odgi view [-i, –idx=FILE] [OPTION]…


The odgi view(1) command can convert a graph in odgi format to GFAv1. It can reveal a graph’s internal structures for e.g. debugging processes.


Graph Files IO

-i, –idx=FILE
File containing the succinct variation graph to convert from. The file name usually ends with .og.
-g, –to-gfa
Write the graph in GFAv1 format to standard output.

Summary Options

-d, –display
Show the internal structures of a graph. Print to stdout the maximum node identifier, the minimum node identifier, the nodes vector, the delete nodes bit vector and the path metadata, each in a separate line.

Program Information

-h, –help
Print a help message for odgi view.