odgi groom¶
resolve spurious inverting links
SYNOPSIS¶
odgi groom [-i, –idx=FILE] [-o, –out=FILE] [OPTION]…
DESCRIPTION¶
The odgi groom(1) command resolves spurious inverting links.
OPTIONS¶
Graph Files IO¶
-i, –idx=FILE
File containing the succinct variation graph to groom. The file name
usually ends with .og.
-o, –out=FILE
Write the groomed succinct variation graph to FILE. The file name
usually ends with .og.
Processing Information¶
-P, –progress
Display progress of the grooming to stderr.
Program Information¶
-h, –help
Print a help message for odgi groom.