odgi overlap¶
find the paths touched by the input paths
SYNOPSIS¶
odgi overlap [-i, –input=FILE] [OPTION]…
DESCRIPTION¶
The odgi overlap(1) command finds the paths touched by the input paths.
OPTIONS¶
Graph Files IO¶
-i, –input=FILE
Perform the search in this graph.
Overlap Options¶
-s, –subset-paths=FILE
Perform the search considering only the paths specified in the FILE;
the file must contain one path name per line and a subset of all paths
can be specified.
-r, –path=STRING
Perform the search of the given path in the graph.
-R, –paths=FILE
Perform the search for the paths listed in FILE
-b, –bed-input=FILE
A BED file of ranges in paths in the graph.
Threading¶
-t, –threads=N
Number of threads to use.
Program Information¶
-h, –help
Print a help message for odgi overlap.