odgi unchop¶
merge unitigs into single nodes
SYNOPSIS¶
odgi unchop [-i, –idx=FILE] [-o, –out=FILE] [OPTION]…
DESCRIPTION¶
The odgi unchop(1) command merges each unitig into a single node preserving the node order.
OPTIONS¶
Graph Files IO¶
-i, –idx=FILE
File containing the succinct variation graph to unchop. The file name
usually ends with .og.
-o, –out=FILE
Write the unchopped dynamic succinct variation graph to this file. A
file ending with .og is recommended.
Processing Information¶
-d, –debug
Print information about the process to stderr.
Threading¶
-t, –threads=N
Number of threads to use for the parallel operations.
Program Information¶
-h, –help
Print a help message for odgi unchop.