odgi unchop

merge unitigs into single nodes


odgi unchop [-i, –idx=FILE] [-o, –out=FILE] [OPTION]…


The odgi unchop(1) command merges each unitig into a single node preserving the node order.


Graph Files IO

-i, –idx=FILE
File containing the succinct variation graph to unchop. The file name usually ends with .og.
-o, –out=FILE
Write the unchopped dynamic succinct variation graph to this file. A file ending with .og is recommended.

Processing Information

-d, –debug
Print information about the process to stderr.


-t, –threads=N
Number of threads to use for the parallel operations.

Program Information

-h, –help
Print a help message for odgi unchop.