odgi normalize¶
compact unitigs and simplify redundant furcations
SYNOPSIS¶
odgi normalize [-i, –idx=FILE] [-o, –out=FILE] [OPTION]…
DESCRIPTION¶
The odgi normalize(1) command unchops odgi unchop a given variation graph and simplifies redundant furcations.
OPTIONS¶
Graph Files IO¶
-i, –idx=FILE
File containing the succinct variation graph to normalize. The file
name usually ends with .og.
-o, –out=FILE
Write the normalized dynamic succinct variation graph to this file. A
file ending with .og is recommended.
-I, –max-iterations=N
Iterate the normalization up to N many times. The default is 10.
Program Debugging¶
-d, –debug
Print information about the normalization process to stdout.
Program Information¶
-h, –help
Print a help message for odgi normalize.