odgi draw

variation graph visualizations in 2D

SYNOPSIS

odgi draw [-i, –idx=FILE] [-c, –coords-in=FILE] [-p, –png=FILE] [OPTION]…

DESCRIPTION

The odgi draw(1) command draws previously-determined 2D layouts of the graph with diverse annotations.

OPTIONS

Files IO

-i, –idx=FILE

Load the graph from this file. The file name usually ends with .og.

-c, –coords-in=FILE

Read the layout coordinates from this .lay format file produced by odgi layout.

-T, –tsv=FILE

Write the TSV layout plus displayed annotations to this file.

-s, –svg=FILE

Write an SVG rendering to this file.

-p, –png=FILE

Write a rasterized PNG rendering to this file.

Visualization Options

-H, –png-height=N

Height of PNG rendering (default: 1000).

-E, –png-border=N

Size of PNG border in bp (default: 10).

-C –color-paths

Color paths (in PNG output).

-R, –scale=N

Image scaling (default 1.0).

-B, –border=N

Image border (in approximate bp) (default 100.0).

-w, –line-width=N

Line width (in approximate bp) (default 0.0).

-S, –path-line-spacing=N

Spacing between path lines in png layout (in approximate bp) (default 0.0).

-X, –path-index=FILE

Load the path index from this file.

Program Information

-h, –help

Print a help message for odgi draw.