odgi explode

breaks a graph into connected components in their own files

SYNOPSIS

odgi explode [-i, –idx=FILE] [-p, –prefix=STRING] [OPTION]…

DESCRIPTION

The odgi explode(1) command breaks a graph into connected components, writing each component in its own file.

OPTIONS

Graph Files IO

-i, –idx=FILE
File containing the succinct variation graph to break in its components. The file name usually ends with .og.

Explode Options

-p, –prefix=STRING
Write each connected component in a file with the given prefix. The file for the component i will be named STRING.i.og (default: component).
-b, –biggest=N
Specify the number of the biggest connected components to write, sorted by decreasing size (default: disabled, for writing them all).
-s, –sorting-criteria=C
Specify how to sort the connected components by size:

    1. path mass (total number of path bases) (default)

    1. graph length (number of node bases)

    1. number of nodes

    1. longest path

-O, –optimize
Compact the node ID space in each connected component.

Threading

-t, –threads=N
Number of threads to use (to write the components in parallel).

Processing Information

-P, –progress
Print information about the components and the progress to stderr.

Program Information

-h, –help
Print a help message for odgi explode.