odgi unitig¶
output unitigs of the graph
SYNOPSIS¶
odgi unitig [-i, –idx=FILE] [OPTION]…
DESCRIPTION¶
The odgi unitig(1) command can print all unitigs of a given odgi graph to standard output in FASTA format. Unitigs can also be emitted in a fixed sequence quality FASTQ format. Various parameters can refine the unitigs to print.
OPTIONS¶
Graph Files IO¶
-i, –idx=FILE
File containing the succinct variation graph to convert from. The file
name usually ends with .og.
FASTQ Options¶
-f, –fake-fastq
Write the unitigs in FASTQ format to stdout with a fixed quality value
of I.
Unitig Options¶
-t, –sample-to=N
Continue unitigs with a random walk in the graph so that they have at
least the given N length.
-p, –sample-plus=N
Continue unitigs with a random walk in the graph by N past their
natural end.
-l, –min-begin-node-length=N
Only begin unitigs collection from nodes which have at least length
N.
Program Information¶
-h, –help
Print a help message for odgi unitig.