odgi squeeze

squeezes multiple graphs into the same file


odgi squeeze [-f, –input-graphs=FILE] [-o, –out=FILE] [OPTION]…


The odgi squeeze(1) command merges multiple graphs into the same file.


Graph Files IO

-f, –input-graphs=FILE
Input file containing the list of graphs to squeeze into the same file. The file must contain one path per line.
-o, –out=FILE
Store all the input graphs in this file. The file name usually ends with .og.

Squeeze Options

-s, –rank-suffix=STRING
Add the separator and the input file rank as suffix to the path names (to avoid path name collisions).
-O, –optimize
Compact the node ID space in each input file before imploding.


-t, –threads=N
Number of threads to use.

Processing Information

-P, –progress
Print information about the progress to stderr.

Program Information

-h, –help
Print a help message for odgi squeeze.