Translate path positions between graphs

Translate path positions between graphs (odgi position application): we use that to go from a smoothed graph to a consensus graph and vice versa, but we need a more general example of 2 graphs (from different runs, for example).

NOTE: - two graphs with different genomes in them except for the reference - two studies make graphs - they are different, but good individually - now let’s compare them… I have a variant in some gene I’m interested in in one - where is that in the other graph? what paths are there? - let’s pull out the region in both graphs and visualize them

  1. Download 2 GFAs from here (?????? and ??????)

  2. odgi build + odgi build

A) GENERAL EXAMPLE: we need 2 graphs to show a general case (from different runs, for example) 3) …

B) SPECIFIC PGGB EXAMPLE: from consensus graph to smoothed graph odgi is used in productin in pggb (link). Very little explanation, and then explain 4) consensus->smoothed 5 NOT SURE) smoothed->consensus