Index

A

append_step() (in module odgi.graph), [1] (odgi.graph method) apply_ordering() (in module odgi.graph), [1] (odgi.graph method)

apply_orientation() (in module odgi.graph), [1] (odgi.graph method) apply_path_ordering() (in module odgi.graph), [1] (odgi.graph method)

C

clear() (in module odgi.graph), [1] (odgi.graph method) clear_paths() (in module odgi.graph), [1] (odgi.graph method) combine_handles() (in module odgi.graph), [1] (odgi.graph method)

create_edge() (in module odgi.graph), [1] (odgi.graph method) create_handle() (in module odgi.graph), [1] (odgi.graph method) create_path_handle() (in module odgi.graph), [1] (odgi.graph method)

D

destroy_edge() (in module odgi.graph), [1] (odgi.graph method) destroy_handle() (in module odgi.graph), [1] (odgi.graph method)

destroy_path() (in module odgi.graph), [1] (odgi.graph method) divide_handle() (in module odgi.graph), [1] (odgi.graph method)

E

edge (class in odgi)

edge_handle() (in module odgi.graph), [1] (odgi.graph method)

F

flip() (in module odgi.graph), [1] (odgi.graph method) follow_edges() (in module odgi.graph), [1] (odgi.graph method) for_each_handle() (in module odgi.graph), [1] (odgi.graph method) for_each_path_handle() (in module odgi.graph), [1] (odgi.graph method)

for_each_step_in_path() (in module odgi.graph), [1] (odgi.graph method) for_each_step_on_handle() (in module odgi.graph), [1] (odgi.graph method) forward() (in module odgi.graph), [1] (odgi.graph method)

G

get_degree() (in module odgi.graph), [1] (odgi.graph method) get_handle() (in module odgi.graph), [1] (odgi.graph method) get_handle_of_step() (in module odgi.graph), [1] (odgi.graph method) get_id() (in module odgi.graph), [1] (odgi.graph method) get_is_circular() (in module odgi.graph), [1] (odgi.graph method) get_is_reverse() (in module odgi.graph), [1] (odgi.graph method) get_length() (in module odgi.graph), [1] (odgi.graph method) get_next_step() (in module odgi.graph), [1] (odgi.graph method) get_node_count() (in module odgi.graph), [1] (odgi.graph method)

get_path() (in module odgi.graph), [1] (odgi.graph method) get_path_count() (in module odgi.graph), [1] (odgi.graph method) get_path_handle() (in module odgi.graph), [1] (odgi.graph method) get_path_handle_of_step() (in module odgi.graph), [1] (odgi.graph method) get_path_name() (in module odgi.graph), [1] (odgi.graph method) get_previous_step() (in module odgi.graph), [1] (odgi.graph method) get_sequence() (in module odgi.graph), [1] (odgi.graph method) get_step_count() (in module odgi.graph), [1], [2], [3] (odgi.graph method) graph (class in odgi)

H

handle (class in odgi) has_edge() (in module odgi.graph), [1] (odgi.graph method) has_next_step() (in module odgi.graph), [1] (odgi.graph method)

has_node() (in module odgi.graph), [1] (odgi.graph method) has_path() (in module odgi.graph), [1] (odgi.graph method) has_previous_step() (in module odgi.graph), [1] (odgi.graph method)

I

insert_step() (odgi.graph method) is_empty() (in module odgi.graph), [1] (odgi.graph method)

is_path_end() (in module odgi.graph), [1] (odgi.graph method) is_path_front_end() (in module odgi.graph), [1] (odgi.graph method)

L

load() (in module odgi.graph), [1] (odgi.graph method)

M

max_node_id() (in module odgi.graph), [1] (odgi.graph method) min_node_id() (in module odgi.graph), [1] (odgi.graph method)

module odgi

O

odgi module

optimize() (in module odgi.graph), [1] (odgi.graph method)

P

path_back() (in module odgi.graph), [1] (odgi.graph method) path_begin() (in module odgi.graph), [1] (odgi.graph method) path_end() (in module odgi.graph), [1] (odgi.graph method)

path_front_end() (in module odgi.graph), [1] (odgi.graph method) path_handle (class in odgi) prepend_step() (in module odgi.graph), [1] (odgi.graph method)

R

rewrite_segment() (in module odgi.graph), [1] (odgi.graph method)

S

serialize() (in module odgi.graph), [1] (odgi.graph method) set_circularity() (in module odgi.graph), [1] (odgi.graph method)

set_step() (in module odgi.graph), [1] (odgi.graph method) step_handle (class in odgi) steps_of_handle() (in module odgi.graph), [1] (odgi.graph method)

T

to_gfa() (in module odgi.graph), [1] (odgi.graph method)